PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00442.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 174aa    MW: 20593.7 Da    PI: 10.0904
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00442.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.71.1e-19101323128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                               GfrFhP d+el+ +yLk+ + +k l+  ++ik  +++ +++Pw++     ++ek +yf s+  + +++ k+ +r++ +g+Wk + 
  Sme2.5_00442.1_g00004.1  10 LGFRFHPMDKELI-NYLKNFMLRKILPPIDFIKVKEVFgDSQPWQIM----EGEKTCYFLSRLTRFKNSTKKFSRTVGTGTWKGQA 90 
                              6************.9*********98887889988766268*****6....468899**********99***************** PP

                      NAM  88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              k+k++ +   k+ ++g k++L +   + +k ++ + +m+ey l
  Sme2.5_00442.1_g00004.1  91 KSKSISDGsrKNVTIGYKRSLRYE-SDVEKEQNGKSLMKEYFL 132
                              *****997556667********98.555555788999**9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-187154IPR003441NAC domain
PROSITE profilePS5100521.7758154IPR003441NAC domain
PfamPF023651.8E-1311131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSSSKSKHTL GFRFHPMDKE LINYLKNFML RKILPPIDFI KVKEVFGDSQ PWQIMEGEKT  60
CYFLSRLTRF KNSTKKFSRT VGTGTWKGQA KSKSISDGSR KNVTIGYKRS LRYESDVEKE  120
QNGKSLMKEY FLPEEYVKRS RYNDIFVICR IKQKKQKEDA DYKEVTEEEV DEVI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010312893.19e-64PREDICTED: NAC domain-containing protein 48-like
RefseqXP_016549492.15e-63PREDICTED: NAC domain-containing protein 78-like
RefseqXP_016549495.11e-62PREDICTED: NAC domain-containing protein 78-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.13e-14NAC domain containing protein 2